HOME Reasons to use ArrayAssist and PathwayArchitect software
- Powerful. Both one color (Affy oligo array) and two-color
spotted expression arrays; both parametric and non-parametric analysis;
dealing with small number of replicates; Applying R and call your own
functions from Bio-conductor; GO enrichment; additional analysis such as
pathways.
- Secure. Your data
can be stored on either your desktop or on the server, which backups
regularly.
- Fast and flexibility. Your can run your own dataset
on your own fast machine, no worries about server slowing down. The server is a 4-CPU machine with 4GB
RAM.
- Enterprise wide server. Potential to
serve up to 200 users (5 at the same time). The older version (GeneTraffic)
has ~20 registered users.
- Do it yourself.
Easy-to-follow user manual is available.
- Free. Before the Cancer Center
and Heflin
Center charge
you for using the software, it is free for UAB wide investigators.
Steps for installation
- Go to http://www.stratagene.com
- Download ArrayAssist Expression
(AAE) Software.
- Install AAE on your desktop.
- Contact Dongquan Chen (dongquan@uab.edu) for new user account
and server information to activate your copy.
- Connect to the Enterprise server
with your user account.
Additional analysis as requested
- Sequence analysis
- GO enrichment
- Pathway analysis
- Figure/tables for publication